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Repository find_in_reference
Name: find_in_reference
Owner: jjohnson
Synopsis: Find and filter sequences by subsequences

Filters lines of a tabular input file by checking if the selected input column
is a substring of the selected column of any line in the reference file.  
This can be used to check if peptides sequences are present in a set of reference proteins,
as a means of filtering out uninteresting peptide sequences.
Development repository: https://github.com/jj-umn/galaxytools/tree/master/find_in_reference
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/jjohnson/find_in_reference/e7e56b51d156
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/find_in_reference
Type: unrestricted
Revision: 0:e7e56b51d156
This revision can be installed: True
Times cloned / installed: 588

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
filter peptides that are present in proteins 0.0.1 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Text Manipulation - Tools for manipulating data