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Repository rsem_datatypes
Name: rsem_datatypes
Owner: jjohnson
Synopsis: Custom galaxy datatypes definitions for use with RSEM
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly 
interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, 
variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95X credibility interval estimates for expression levels. 
http://deweylab.biostat.wisc.edu/rsem/README.html
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/jjohnson/rsem_datatypes/77151afcd323
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/rsem_datatypes
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Contents of this repository

Datatypes
extension type mimetype subclass
rsem_ref galaxy.datatypes.rsem:RsemReference
rsem.genes.results galaxy.datatypes.rsem:RsemGenesResults
rsem.isoforms.results galaxy.datatypes.rsem:RsemIsoformsResults
rsem.ngvec galaxy.datatypes.data:Tabular True
rsem.genemat galaxy.datatypes.data:Tabular True
rsem.isomat galaxy.datatypes.data:Tabular True

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis