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Repository filter_assemblies
Name: filter_assemblies
Owner: abims-sbr
Synopsis: Formats Velvet Oase and Trinity assemblies for the orthologous_search galaxy suite
This tool formats Velvet Oase and Trinity assemblies for the orthologous_search galaxy suite and selects only one variant per gene according to its length and quality check.
Content homepage: https://github.com/abims-sbr/adaptsearch
Development repository: https://github.com/abims-sbr/adaptsearch
Link to this repository: https://toolshed.g2.bx.psu.edu/view/abims-sbr/filter_assemblies/000dbfafe31d
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/abims-sbr/filter_assemblies
Type: unrestricted
Revision: 2:000dbfafe31d
This revision can be installed: True
Times cloned / installed: 331

Repository README files - may contain important installation or license information

Readme files

Changelog

Version 2.0 - 14/04/2017

  • NEW: Replace the zip between tools by Dataset Collection

Version 1.0 - 13/04/2017

  • TEST: Add funtional test with planemo
  • IMPROVEMENT: Use conda dependencies for cap3, fastaformatter and python

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Filter the outputs of Spades, Velvet or Trinity assemblies 2.0.5 16.01

Categories
Phylogenetics - Tools for performing phylogenetic analysis
RNA - Utilities for RNA
Transcriptomics - Tools for use in the study of Transcriptomics.