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Repository circos
Name: circos
Owner: iuc
Synopsis: Build Circos Plots in Galaxy
Allows for creation of circos plots from a Galaxy tool, offering the
ability to create novel circos plots depending on the needs of the
researcher and their workflow.
Content homepage: http://circos.ca/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/circos/014a21767ac4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/circos
Type: unrestricted
Revision: 2:014a21767ac4
This revision can be installed: True
Times cloned / installed: 1813

Repository README files - may contain important installation or license information

Readme files
Galaxy Circos Tool ================== .. figure:: ./static/images/example.png :alt: An image showing a circos plot made with the tool. Features -------- - [x] Ideograms - [x] Can configure most aspects of these. More features on demand - [x] 2d Data sources - [x] Histograms - [x] Stacked histograms - [x] gff3 scores - [x] wig files - [x] bed - [x] Rules - [x] Complex colouring rules - [x] Heatmaps - [x] Tiles - [x] Scatter Plots - [x] Line Plots - [x] Links - [x] Axes - [x] Backgrounds - [x] Highlights - [x] Test cases - [x] Fine grained Z-depth control

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
reformats alignment files to prepare for Circos 0.69.8+galaxy1 16.01
reduce links to a density plot 0.69.8+galaxy1 16.01
reduce numbers of links in datasets before plotting 0.69.8+galaxy1 16.01
visualizes data in a circular layout 0.69.8+galaxy1 16.01
calculates skew over genomic sequences 0.69.8+galaxy1 16.01
reduce numbers of points in a dataset before plotting 0.69.8+galaxy1 16.01
reformats bigWig files to prepare for Circos 2d scatter/line/histogram plots 0.69.8+galaxy1 16.01
easily creates circos plots from tabular data 0.69.8+galaxy1 16.01
reformats interval files to prepare for Circos text labels 0.69.8+galaxy1 16.01
reformats interval files to prepare for Circos tile plots 0.69.8+galaxy1 16.01

Categories
Graphics - Tools producing images