Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository xcms_summary
Name: xcms_summary
Owner: lecorguille
Synopsis: [Metabolomics][W4M][LC-MS] XCMS R Package - Preprocessing - HTML Summary for XCMS and CAMERA analysis
This tool create a HTML summary of XCMS and CAMERA analysis
Part of the W4M project: http://workflow4metabolomics.org
XCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html 
Content homepage: https://github.com/sneumann/xcms
Development repository: https://github.com/workflow4metabolomics/tools-metabolomics/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_summary/018a9771de28
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary
Type: unrestricted
Revision: 28:018a9771de28
This revision can be installed: True
Times cloned / installed: 1234

Repository README files - may contain important installation or license information

Readme files
Changelog/News -------------- .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS **Version 3.12.0+galaxy* - 03/03/2020** - UPGRADE: upgrade the xcms version from 3.6.1 to 3.12.0 (see XCMS News_) **Version 3.6.1+galaxy1 - 05/04/2020** - UPGRADE: upgrade the CAMERA version from 1.38.0 to 1.42.0 - BUGFIX: "Error in chromPeaks(from)[, "is_filled"] : subscript out of bounds" **Version 3.6.1.0 - 03/09/2019** - UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News_) **Version 3.4.4.0 - 08/02/2019** - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_) **Version 3.0.0.0 - 14/02/2018** - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlying codes and methods - IMPROVEMENT: the tool now shows all the parameters and not only those which were setted. **Version 1.0.4 - 13/02/2018** - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0 **Version 1.0.3 - 03/02/2017** - IMPROVEMENT: xcms.summary can deal with merged individual data **Version 1.0.2 - 06/07/2016** - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0 **Version 1.0.1 - 04/04/2016** - TEST: refactoring to pass planemo test using conda dependencies **Version 1.0.0 - 10/02/2016** - NEW: Create a summary of XCMS analysis
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository rdata_xcms_datatypes revision 544f6d2329ac owned by lecorguille
Repository rdata_camera_datatypes revision 4a51ab3d8ecf owned by lecorguille

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Create a summary of XCMS analysis 3.12.0+galaxy0 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics