| Bowtie is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters to relatively long (e.g. mammalian) genomes. Bowtie 2 supports gapped, local, and paired-end alignment modes. Bowtie 2 outputs alignments in SAM format, enabling interoperation with a large number of other tools. |
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/bowtie2
| Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required) |
| Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required) |
| Repository package_bowtie_2_2_6 revision 0d9cd7487cc9 owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| bowtie2 | 2.2.6 | package | |
| samtools | 1.2 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| - map reads against reference genome | 2.2.6 | 16.01 | |