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|
| Name |
Description |
Version |
Minimum Galaxy Version |
|
|
converts 2 or 3 column sequence taxonomy file to a 2 column mothur taxonomy_outline format |
1.0.0 |
any |
|
|
Assign sequences to OTUs based on taxonomy |
1.20.0 |
any |
|
|
Summary of calculator values for OTUs |
1.27.0 |
any |
|
|
Return all sequences |
1.21.0 |
any |
|
|
Get shared sequences at each distance from list and group |
1.21.0 |
any |
|
|
Describes whether two or more communities have the same structure |
1.26.0 |
any |
|
|
Make a group file |
1.20.0 |
any |
|
|
Picks by taxon |
1.21.0 |
any |
|
|
generate non-metric multidimensional scaling data |
1.20.0 |
any |
|
|
Find putative chimeras using ccode |
1.21.0 |
any |
|
|
Remove gap characters from sequences |
1.21.0 |
any |
|
|
Describes whether two or more communities have the same structure |
1.26.0 |
any |
|
|
calculate uncorrected pairwise distances between aligned sequences |
1.20.0 |
any |
|
|
Normalize the number of sequences per group to a specified level |
1.21.0 |
any |
|
|
Get otus for each distance in a otu list |
1.20.0 |
any |
|
|
Denoise program (Quince SeqNoise) |
1.24.0 |
any |
|
|
(aka make.table) counts the number of sequences represented by the representative |
1.21.0 |
any |
|
|
Reverse complement the sequences |
1.20.0 |
any |
|
|
Removes OTU labels |
1.27.0 |
any |
|
|
Generate a heatmap for OTUs |
1.21.0 |
any |
|
|
Assign sequences to taxonomy |
1.22.0 |
any |
|
|
Merge groups in a shared file |
1.25.0 |
any |
|
|
Analysis of molecular variance |
1.20.0 |
any |
|
|
Calculate the number of potentially misaligned bases |
1.20.0 |
any |
|
|
Assign sequences to OTUs (Operational Taxonomic Unit) |
1.20.0 |
any |
|
|
creates a database file from a list, repnames, repfasta and contaxonomy file |
1.28.0 |
any |
|
|
assess error rates in sequencing data |
1.22.0 |
any |
|
|
Remove sequences due to pyrosequencing errors |
1.24.0 |
any |
|
|
Generate a newick tree for dissimilarity among groups |
1.26.0 |
any |
|
|
Get sabund from a otu list or rabund |
1.20.0 |
any |
|
|
Align sequences to a template alignment |
1.20.0 |
any |
|
|
Reinsert the redundant sequence identiers back into a unique tree. |
1.21.0 |
any |
|
|
Create a sub sample |
1.23.0 |
any |
|
|
Merge data |
1.20.0 |
any |
|
|
Picks by taxon |
1.20.0 |
any |
|
|
Generate Venn diagrams for groups |
1.24.0 |
any |
|
|
Make biom files from a shared file |
1.26.0 |
any |
|
|
Selects OTU labels |
1.27.0 |
any |
|
|
Get rabund from a otu list or sabund |
1.19.0 |
any |
|
|
Return unique sequences |
1.21.0 |
any |
|
|
Generate a phylip-formatted dissimilarity distance matrix among multiple groups |
1.26.0 |
any |
|
|
Generate collector's curves for calculators on OTUs |
1.24.0 |
any |
|
|
Generate collector's curves for OTUs |
1.21.0 |
any |
|
|
Draw a Phylogenic Tree |
1.0 |
any |
|
|
Identify indicator "species" for nodes on a tree |
1.22.0 |
any |
|
|
Find putative chimeras using pintail |
1.21.0 |
any |
|
|
partition by barcode, trim to length, cull by lenght and mismatches |
1.23.0 |
any |
|
|
Aligns paired forward and reverse fastq files to contigs as fasta and quality |
1.27.0 |
any |
|
|
removes columns from alignments |
1.20.0 |
any |
|
|
counts the number of sequences represented by a specific group or set of groups |
1.23.0 |
any |
|
|
Cramer-von Mises tests communities for the same structure |
1.20.0 |
any |
|
|
Find putative chimeras using chimeraCheck |
1.21.0 |
any |
|
|
Get a consensus taxonomy for each node on a tree |
1.25.0 |
any |
|
|
Find a consensus sequence for each OTU or phylotype |
1.21.0 |
any |
|
|
Assign sequences to taxonomy |
1.23.0 |
any |
|
|
Convert fasta and quality to fastq |
1.20.0 |
any |
|
|
Picks sequences by name |
1.20.0 |
any |
|
|
Make a shared file from a list and a group |
1.23.0 |
any |
|
|
Generate intra-sample rarefaction curves for OTUs |
1.21.0 |
any |
|
|
Make a shared file from a biom file |
1.25.0 |
any |
|
|
Find putative chimeras using chimeraCheck |
1.24.0 |
any |
|
|
Select groups |
1.24.0 |
any |
|
|
Principal Coordinate Analysis for a shared file |
1.21.0 |
any |
|
|
Remove sequences by name |
1.21.0 |
any |
|
|
Homogeneity of molecular variance |
1.20.0 |
any |
|
|
Calculate the correlation coefficient for the otus |
1.25.0 |
any |
|
|
Find putative chimeras using slayer |
1.23.0 |
any |
|
|
Assign sequences to OTUs (Dotur implementation) |
1.88.0 |
any |
|
|
Summarize the quality scores |
1.24.0 |
any |
|
|
tests whether presence-absence patterns differ from chance |
1.26.0 |
any |
|
|
correlation of data to axes |
1.21.0 |
any |
|
|
Generate a List file for each group |
1.19.0 |
any |
|
|
Generate a fasta with a representative sequence for each OTU |
1.23.0 |
any |
|
|
Assign groups to Sets |
1.20.0 |
any |
|
|
Screen sequences |
1.24.0 |
any |
|
|
Relate OTUs at different distances |
1.20.0 |
any |
|
|
Summary of calculator values for OTUs |
1.20.0 |
any |
|
|
Determine the quality of OTU assignment |
1.20.0 |
any |
|
|
Remove rare OTUs |
1.20.0 |
any |
|
|
Alpha Diversity calculates unique branch length |
1.21.0 |
any |
|
|
Group sequences that are part of a larger sequence |
1.21.0 |
any |
|
|
Trim sequences to a specified length |
1.20.0 |
any |
|
|
Convert fastq to fasta and quality |
1.25.0 |
any |
|
|
Assign sequences to OTUs (Operational Taxonomic Unit) splits large matrices |
1.28.0 |
any |
|
|
Generate inter-sample rarefaction curves for OTUs |
1.27.0 |
any |
|
|
Find putative chimeras using uchime |
1.23.0 |
any |
|
|
Trim sequences - primers, barcodes, quality |
1.25.0 |
any |
|
|
fraction of OTUs for samples or abundances |
1.27.0 |
any |
|
|
Assign sequences to OTUs (Operational Taxonomic Unit) |
1.28.0 |
any |
|
|
Calculate the relative abundance of each otu |
1.21.0 |
any |
|
|
group names from shared or from list and group |
1.20.0 |
any |
|
|
calculate uncorrected pairwise distances between sequences |
1.20.0 |
any |
|
|
generate principle components plot data |
1.21.0 |
any |
|
|
Denoise flowgrams (PyroNoise algorithm) |
1.27.0 |
any |
|
|
Summarize the quality of sequences |
1.25.0 |
any |
|
|
Describes whether two or more communities have the same structure |
1.20.0 |
any |
|
|
Generates a fasta file for each group |
1.21.0 |
any |
|
|
Get otus containing sequences from specified groups |
1.20.0 |
any |
|
|
Mantel correlation coefficient between two matrices. |
1.20.0 |
any |
|
|
Lists the names (accnos) of the sequences |
1.20.0 |
any |
|
|
Merge SFF files |
1.1.0 |
any |
|
|
Generate a heatmap for pariwise similarity |
1.24.0 |
any |
|
|
Generate a tree using relaxed neighbor joining |
1.20.0 |
any |
|
|
Lists otu labels from shared or relabund file |
1.27.0 |
any |
|
|
Principal Coordinate Analysis for a distance matrix |
1.20.0 |
any |
|
|
Summarize the quality of sequences |
1.20.0 |
any |
|
|
Find putative chimeras using bellerophon |
1.21.0 |
any |
|
|
Assign sequences to taxonomy |
1.21.0 |
any |
|
|
Separate sequences into rare and abundant groups |
1.20.0 |
any |
|
|
Remove otus containing sequences from specified groups |
1.20.0 |
any |
|
|
Order Sequences by OTU |
1.21.0 |
any |
|
|
Remove groups from groups,fasta,names,list,taxonomy |
1.25.0 |
any |
|
|
Trim sequences |
1.26.0 |
any |
|
|
Non-parametric multivariate analysis of changes in community structure |
1.20.0 |
any |
|
|
put sequences in different files in the same order |
1.25.0 |
any |