Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository dram_annotate
Name: dram_annotate
Owner: iuc
Synopsis: Wrapper for DRAM: DRAM annotate
DRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes
and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using UniRef90, PFAM, dbCAN,
RefSeq viral, VOGDB and the MEROPS peptidase database as well as custom user databases. DRAM is run in two
stages. First an annotation step to assign database identifiers to genes and then a distill step to curate
these annotations into useful functional categories. Additionally, viral contigs are further analyzed to
identify potential AMGs. This is done via assigning an auxiliary score and flags representing the confidence
that a gene is both metabolic and viral.
Content homepage: https://github.com/WrightonLabCSU/DRAM
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/dram_annotate/0515750e7b10
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dram_annotate
Type: unrestricted
Revision: 2:0515750e7b10
This revision can be installed: True
Times cloned / installed: 144

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
metagenome-assembled-genomes (MAGs) 1.3.5+galaxy1 20.09

Categories
Metagenomics - Tools enabling the study of metagenomes