Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository sartools
Name: sartools
Owner: lgueguen
Synopsis: SARTools is a R package dedicated to the differential analysis of RNA-seq data.
SARTools provides R tools and an environment for the statistical analysis of RNA-Seq projects: load and clean data, produce figures, perform statistical analysis/testing with DESeq2 or edgeR, export results and create final report.
Content homepage: https://github.com/PF2-pasteur-fr/SARTools
Development repository: https://github.com/PF2-pasteur-fr/SARTools-Galaxy
Link to this repository: https://toolshed.g2.bx.psu.edu/view/lgueguen/sartools/05c9b1a7f44e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/lgueguen/sartools
Type: unrestricted
Revision: 4:05c9b1a7f44e
This revision can be installed: True
Times cloned / installed: 602
Dependencies of this repository

Repository dependencies - SARTools requires the Galaxy applicable data format no_unzip.zip
Repository no_unzip_datatype revision 7800ba9a4c1e owned by lecorguille

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
generate design/target file and archive for SARTools inputs 0.1.1 16.01
Compare two or more biological conditions in a RNA-Seq framework with DESeq2 1.7.3+galaxy0 16.01
Compare two or more biological conditions in a RNA-Seq framework with edgeR 1.7.3+galaxy0 16.01

Categories
RNA - Utilities for RNA
Statistics - Tools for generating statistics
Transcriptomics - Tools for use in the study of Transcriptomics.