Repository retrieve_bold
Name: retrieve_bold
Owner: ecology
Synopsis: Search a list of sequences from BOLD
This tool was created from the MARES Database pipeline repository. Sequences are retrieved thanks to BOLD r-package (Barcode of Life Data System). This tool provides a fasta file for each to be processed taxa. This tool allows the specification of a wide diversity of metabarcoding markers. 
Content homepage: https://anaconda.org/conda-forge/r-bold
Development repository: https://github.com/wpearman1996/MARES_database_pipeline/tree/master
Link to this repository: https://toolshed.g2.bx.psu.edu/view/ecology/retrieve_bold/0608a259f2da
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ecology/retrieve_bold
Type: unrestricted
Revision: 0:0608a259f2da
This revision can be installed: True
Times cloned / installed: 46

Contents of this repository

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Name Description Version Minimum Galaxy Version
Functions to search in Bold and download the available sequences of each subtaxa (get_fasta) 1.3.0+galaxy0 21.05

Categories
Ecology - Tools related to ecological studies