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Repository tophat2
Name: tophat2
Owner: devteam
Synopsis: Tophat - fast splice junction mapper for RNA-Seq reads
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read
aligner Bowtie(2), and then analyzes the mapping results to identify splice junctions
between exons.
Content homepage: http://ccb.jhu.edu/software/tophat/index.shtml
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/tophat2/0849fa93eadb
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/tophat2
Type: unrestricted
Revision: 9:0849fa93eadb
This revision can be installed: True
Times cloned / installed: 8537
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_bowtie_2_2_5 revision 30bd7eaeddbf owned by iuc
Repository package_tophat_2_1_0 revision ed92d4c8e7f6 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie2 2.2.5 package
tophat 2.1.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Gapped-read mapper for RNA-seq data 2.1.0 any

Categories
RNA - Utilities for RNA