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Repository pileup_interval
Name: pileup_interval
Owner: devteam
Synopsis: Pileup-to-Interval condenses pileup format into ranges of bases
Reduces the size of a results set by taking a pileup file and producing
a condensed version showing consecutive sequences of bases meeting coverage criteria.
The tool works on six and ten column pileup formats produced with *samtools pileup*
command. You also can specify columns for the input file manually. The tool assumes
that the pileup dataset was produced by *samtools pileup* command (although you
can override this by setting column assignments manually).
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/pileup_interval
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/pileup_interval/0b4181be05c8
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval
Type: unrestricted
Revision: 2:0b4181be05c8
This revision can be installed: True
Times cloned / installed: 4478
Dependencies of this repository

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Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 0.1.19 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
condenses pileup format into ranges of bases 1.0.1 any

Categories
SAM - Tools for manipulating alignments in the SAM format