Contains variant calling tools and workflows. |
hg clone https://toolshed.g2.bx.psu.edu/repos/scisjnu123/ngsap_vc
Name | Version | Type | |
---|---|---|---|
package_r_for_gatk_3_4_0 | 3.1.2.1 | package | |
GATK_PATH | set_environment | ||
GATK_SITE_OPTIONS | set_environment |
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
tool collection Version 3.4-0 | 3.4-0.d9 | 16.01 | |
somatic mutation caller for cancer genomics | 2.3.5 | 16.01 | |
mutation caller for targeted, exome, and whole-genome resequencing | 2.3.5 | 16.01 | |
BAM, chromosome info or sv files | 1.0.0 | 16.01 | |
structural variants between two samples | 1.0.0 | 16.01 | |
to get abnormal pairs | 1.0.0 | 16.01 | |
plots | 1.1.0 | 16.01 | |
and identify structural variants | 1.0.0 | 16.01 |