Galaxy |

Repository revision

Repository segemehl

Name: segemehl

Owner: rnateam

Synopsis: segemehl - short read mapping with gaps

Detailed description:

segemehl is a software to map short sequencer reads to reference genomes.
Unlike other methods, segemehl is able to detect not only mismatches but also
insertions and deletions. Furthermore, segemehl is not limited to a specific
read length and is able to mapprimer- or polyadenylation contaminated reads
correctly. segemehl implements a matching strategy based on enhanced suffix
arrays (ESA). Segemehl now supports the SAM format, reads gziped queries to
save both disk and memory space and allows bisulfite sequencing mapping and
split read mapping.

http://www.bioinf.uni-leipzig.de/Software/segemehl/

Content homepage: http://www.bioinf.uni-leipzig.de/Software/segemehl/

Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/segemehl

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/rnateam/segemehl/0da425524259

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/segemehl

Type: unrestricted

Revision: 2:0da425524259

This revision can be installed: True

Times cloned / installed: 905