| Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. http://catchenlab.life.illinois.edu/stacks/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks_pstacks
| Repository package_samtools_0_1_19 revision c9bd782f5342 owned by iuc (prior install required) |
| Repository package_velvet_1_2_10 revision 93d32326537b owned by devteam |
| Name | Version | Type | |
|---|---|---|---|
| stacks | 1.40 | package | |
| velvet | 1.2.10 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| find stacks from short reads mapped to a reference genome | 1.40.0 | any | |