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Repository data_manager_gtdbtk_database_installer
Name: data_manager_gtdbtk_database_installer
Owner: iuc
Synopsis: Install GTDB-Tk databases
Installs the selected version of the GTDB-Tk database, associating it with the gtdbtk_database data table.  GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. It is designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.  The GTDB-Tk is open source and released under the GNU General Public License (Version 3).
Content homepage: https://github.com/Ecogenomics/GTDBTk
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_gtdbtk_database_installer/10232d2b5062
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_gtdbtk_database_installer
Type: unrestricted
Revision: 4:10232d2b5062
This revision can be installed: True
Times cloned / installed: 208

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
202+galaxy0 20.09

Data Managers
Name Version Data Tables
gtdbtk_database_installer 0.0.1 gtdbtk_database_versioned, gtdbtk_database_metadata_versioned

Categories
Data Managers - Utilities for Managing Galaxy's built-in data cache