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Repository nmr_preprocessing
Name: nmr_preprocessing
Owner: marie-tremblay-metatoul
Synopsis: [Metabolomics][W4M][NMR] NMR Preprocessing - Preprocessing of 1D NMR spectra from FID to baseline correction
Part of the W4M project: http://workflow4metabolomics.org
Content homepage: http://workflow4metabolomics.org
Development repository: https://github.com/workflow4metabolomics/nmr_preprocessing
Link to this repository: https://toolshed.g2.bx.psu.edu/view/marie-tremblay-metatoul/nmr_preprocessing/122df1bf0a8c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/marie-tremblay-metatoul/nmr_preprocessing
Type: unrestricted
Revision: 7:122df1bf0a8c
This revision can be installed: True
Times cloned / installed: 619

Repository README files - may contain important installation or license information

Readme files

Changelog/News

Version 3.2.0

  • Updated R scripts and the help section of NMR_ReadFids and NMR_preprocessing
  • Added sections
  • Created a variableMetadata file in output of the NMR_preprocessing module
  • Homogenised the input-output file names with the other modules
  • Suppressed the option ptw for the baseline correction, set to TRUE all the time now
  • Shift referencing: other values than 0 are admitted
  • The log file recovers the input/output parameters
  • Added an exclusion zone for the computation of the Baseline Correction criterion
  • Switched Internal Referencing (goes second) and Zero Order Phase Correction (goes first)

Version 3.1.0

  • Implementation of NMR_ReadFids and NMR_preprocessing

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Preprocessing of 1D NMR spectra 3.3.0+galaxy2 16.01
Read Bruker NMR raw files 3.3.0+galaxy1 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics