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Repository megahit

Name: megahit

Owner: iuc

Synopsis: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.

Detailed description:

MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to accelerate its SdBG contstruction. The GPU-accelerated version of MEGAHIT has been tested on NVIDIA GTX680 (4G memory) and Tesla K40c (12G memory) with CUDA 5.5, 6.0 and 6.5. MEGAHIT v1.0 or greater also supports IBM Power PC and has been tested on IBM POWER8.

Content homepage: https://github.com/voutcn/megahit

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/megahit

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/megahit/14ddfc8ffb93

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/megahit

Type: unrestricted

Revision: 6:14ddfc8ffb93

This revision can be installed: True

Times cloned / installed: 1154