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Repository psm_to_sam
Name: psm_to_sam
Owner: galaxyp
Synopsis: PSM to SAM
The interpretation of proteomics data is significantly enhanced by genomic annotation. 
Using proBAMr, peptide-spectrum-matches can be easily reannotated using user-specified gene annotation 
schemes and assembled into both protein and gene identifications. Using the genome as a common reference, 
proBAMr facilitates seamless proteomics and proteogenomics data integration. ProBAM files can be readily 
visualized in genome browsers and thus bring proteomics data analysis to a general audience beyond the 
proteomics community.
Content homepage: https://bioconductor.org/packages/release/bioc/html/proBAMr.html
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/psm2sam
Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/psm_to_sam/16c4cc7793e9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/psm_to_sam
Type: unrestricted
Revision: 3:16c4cc7793e9
This revision can be installed: True
Times cloned / installed: 370

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Generate SAM files from PSMs. 1.3.2.1 16.01

Categories
Proteomics - Tools enabling the study of proteins