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Repository schicexplorer_schiccorrectmatrices
Name: schicexplorer_schiccorrectmatrices
Owner: iuc
Synopsis: Wrapper for scHiCExplorer: scHicCorrectMatrices
Sequencing techniques that probe the 3D organization of the genome generate large amounts of
data whose processing, analysis and visualization is challenging. Here, we present scHiCExplorer,
a set of tools for the analysis and visualization of single-cell chromosome conformation data. scHiCExplorer
facilitates the creation of contact matrices, correction of contacts, merging,
reordering or chromosomes, dimension reduction and clustering of cells.
Repository-Maintainer: Joachim Wolff
https://github.com/joachimwolff/schicexplorer
Content homepage: https://github.com/joachimwolff/schicexplorer
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schiccorrectmatrices/16dda99bd733
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccorrectmatrices
Type: unrestricted
Revision: 1:16dda99bd733
This revision can be installed: True
Times cloned / installed: 345

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
correct with KR algorithm single-cell Hi-C interaction matrices 4.0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Transcriptomics - Tools for use in the study of Transcriptomics.
Visualization - Tools for visualizing data