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Repository cuffmerge
Name: cuffmerge
Owner: devteam
Synopsis: Galaxy wrappers for the Cuffmerge tool.
Cuffmerge merges together several Cufflinks assemblies and automatically filters a number of transfrags that are
probably artfifacts. If you have a reference GTF file available, you can provide it to the script in order to gracefully merge 
novel isoforms and known isoforms and maximize overall assembly quality.
Content homepage: http://cole-trapnell-lab.github.io/cufflinks/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffmerge
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/cuffmerge/1707a530e598
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge
Type: unrestricted
Revision: 12:1707a530e598
This revision can be installed: True
Times cloned / installed: 6475
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_cufflinks_2_2_1 revision 899067a260d1 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
cufflinks 2.2.1 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
merge together several Cufflinks assemblies 2.2.1.0 any

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.