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Repository metagene_annotator
Name: metagene_annotator
Owner: galaxyp
Synopsis: MetaGeneAnnotator gene-finding program for prokaryote and phage

MetaGeneAnnotator (MGA) precisely predicts all kinds of 
prokaryotic genes from a single or a set of anonymous 
genomic sequences having a variety of lengths. 
The MGA integrates statistical models of prophage genes, 
in addition to those of bacterial and archaeal genes, 
and also uses a self-training model from input sequences 
for predictions. As a result, the MGA sensitively detects 
not only typical genes but also atypical genes, such as 
horizontally transferred and prophage genes in a 
prokaryotic genome. 

MetaGeneAnnotator results are used by sixgill to generate 
metapeptides.

http://metagene.cb.k.u-tokyo.ac.jp/

doi: 10.1093/dnares/dsn027
Content homepage: http://metagene.nig.ac.jp/
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/metagene_annotator
Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/metagene_annotator/17c7ab82bfbc
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/metagene_annotator
Type: unrestricted
Revision: 1:17c7ab82bfbc
This revision can be installed: True
Times cloned / installed: 321

Contents of this repository

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Name Description Version Minimum Galaxy Version
gene-finding program for prokaryote and phage (used by sixgill) 1.0+galaxy1 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis