| Includes aacoverage, callaavar, callcodonvar, callntvar, consensus, distance, dnds, drmutations, and the hydra pipeline. |
hg clone https://toolshed.g2.bx.psu.edu/repos/nml/quasitools
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Identifies amino acid mutations | 0.7.0+galaxy1 | 16.01 | |
| Builds an aa census and returns its coverage | 0.7.0+galaxy1 | 16.01 | |
| Calculate the evolutionary distance between viral quasispecies. | 0.7.0+galaxy1 | 16.01 | |
| Identifies drug resistance within an NGS dataset | 0.7.0+galaxy1 | 16.01 | |
| 0.7.0+galaxy1 | 16.01 | ||
| Calculate the dN/dS value for each region in a bed file | 0.7.0+galaxy1 | 16.01 | |
| 0.7.0+galaxy1 | 16.01 | ||
| Identifies codon variants and non-synonymous/synonymous mutations | 0.7.0+galaxy1 | 16.01 | |
| Identifies nucleotide variants | 0.7.0+galaxy1 | 16.01 | |
| Generate a consensus sequence from a BAM file | 0.7.0+galaxy1 | 16.01 | |
| 0.7.0+galaxy1 | 16.01 | ||
| Performs quality control on FASTQ reads. | 0.7.0+galaxy1 | 16.01 | |