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Repository jbrowse

Name: jbrowse

Owner: iuc

Synopsis: JBrowse Genome Browser integrated as a Galaxy Tool

Detailed description:

JBrowse is a fast, extensible JS+HTML5 genome browser.

This repository contains a couple of tools aimed at building up a complete
JBrowse Genome Browser deployment from raw data files such as gff3, bed, bam,
vcf, blastxml, and more...

The tools produce a ready-to-deploy HTML file and associated processed
datasets, allowing visualization of the genome either from within Galaxy, or
outside of Galaxy.

The tool must be whitelisted for HTML content. If BAM files are displayed, it
must be served from an apache or nginx server implementing sendfile.

https://jbrowse.org

Content homepage: https://jbrowse.org

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/18be2d72fdee

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/jbrowse

Type: unrestricted

Revision: 14:18be2d72fdee

This revision can be installed: True

Times cloned / installed: 5144