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Repository rpextractsink
Name: rpextractsink
Owner: tduigou
Synopsis: Generate the RetroPath2.0 sink file from an SBML input
Sink refers to the collection of chemical species used by the restrosynthesis algorithm of RetroPath2.0 to finish metabolic route exploration. This tool uses an SBML file of the desired chassis organism, parses all the molecules within a specified compartment (example: cytoplasm, Golgi apparatus, nucleus, etc) and uses its MIRIAM annotation to find their InChI structures. Source code may be found at the following location: https://github.com/brsynth/rptools/tree/master/rptools/rpextractsink
Development repository: https://github.com/brsynth/synbiocad-galaxy-wrappers/tree/master/rpExtractSink
Link to this repository: https://toolshed.g2.bx.psu.edu/view/tduigou/rpextractsink/191665a689de
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/tduigou/rpextractsink
Type: unrestricted
Revision: 4:191665a689de
This revision can be installed: True
Times cloned / installed: 114

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Name Description Version Minimum Galaxy Version
Generate the RetroPath2.0 sink file from an SBML input 6.0.1+galaxy0 21.09

Categories
Synthetic Biology - Tools for synthetic biology