Repository suite_mothur
Name: suite_mothur
Owner: iuc
Synopsis: A suite of tools designed to bring the mothur project into Galaxy.
The mothur project seeks to offers a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
We have incorporated the functionality of dotur, sons, treeclimber, s-libshuff, unifrac, and much more.
In addition to improving the flexibility of these algorithms, we have added a number of other features including calculators and visualization tools.
Content homepage: https://www.mothur.org
Type: repository_suite_definition
Revision: 14:1c726cc47ae6
This revision can be installed: True
Times cloned / installed: 3711
Dependencies of this repository

Repository mothur_get_oturep revision 305ce07a4b16 owned by iuc
Repository mothur_dist_shared revision 418100660ba3 owned by iuc
Repository mothur_summary_seqs revision 600c14c6dcc5 owned by iuc
Repository mothur_make_lookup revision 9a074f55579e owned by iuc
Repository mothur_get_otulist revision 85f75125d861 owned by iuc
Repository mothur_phylotype revision e6ecdb693d0c owned by iuc
Repository mothur_get_coremicrobiome revision da05ce41f8f0 owned by iuc
Repository mothur_indicator revision f3e6f88445fb owned by iuc
Repository mothur_summary_qual revision 7afd2d352e05 owned by iuc
Repository mothur_count_groups revision dc3826bfc1ed owned by iuc
Repository mothur_filter_shared revision c8c3b2271c87 owned by iuc
Repository mothur_collect_single revision a52aa1bdc760 owned by iuc
Repository mothur_lefse revision d952b95bafe9 owned by iuc
Repository mothur_cluster_split revision 19f45bdbffd9 owned by iuc
Repository mothur_sort_seqs revision 437838af4988 owned by iuc
Repository mothur_otu_association revision 7cfe3ddd183a owned by iuc
Repository mothur_venn revision 4db54b1c1d83 owned by iuc
Repository mothur_chimera_uchime revision d9fe0fecb696 owned by iuc
Repository mothur_pcr_seqs revision 644d8a3af62d owned by iuc
Repository mothur_pca revision b931ab1fb5da owned by iuc
Repository mothur_get_sabund revision c550ce2ebe1f owned by iuc
Repository mothur_deunique_tree revision 283af2e6130c owned by iuc
Repository mothur_unifrac_unweighted revision 2933ee6251d8 owned by iuc
Repository mothur_consensus_seqs revision 6f281dc9d01c owned by iuc
Repository mothur_trim_flows revision 1fead600dbd4 owned by iuc
Repository mothur_filter_seqs revision 3524ca06478e owned by iuc
Repository mothur_make_fastq revision 4287ded138de owned by iuc
Repository mothur_taxonomy_to_krona revision db30eb96ea23 owned by iuc
Repository mothur_summary_tax revision a7e1d78c70f5 owned by iuc
Repository mothur_align_check revision 2f668a63a256 owned by iuc
Repository mothur_get_rabund revision 4a52424269e1 owned by iuc
Repository mothur_remove_otulabels revision c378fb3fda31 owned by iuc
Repository mothur_dist_seqs revision 4d76fba83f24 owned by iuc
Repository mothur_remove_seqs revision d38f2ac5db71 owned by iuc
Repository mothur_merge_groups revision 2624af4d11ac owned by iuc
Repository mothur_merge_sfffiles revision b562d71b9508 owned by iuc
Repository mothur_get_otulabels revision fbd1d5bf02bf owned by iuc
Repository mothur_remove_dists revision 56ad298415d8 owned by iuc
Repository mothur_chop_seqs revision e7a88b8551ff owned by iuc
Repository mothur_classify_tree revision 5d8809423177 owned by iuc
Repository mothur_heatmap_sim revision 7f5707dd6073 owned by iuc
Repository mothur_summary_shared revision 50751118a506 owned by iuc
Repository mothur_list_otulabels revision 6e895dd848e8 owned by iuc
Repository mothur_split_abund revision ff3e693f8d4d owned by iuc
Repository mothur_create_database revision 16f6d606521a owned by iuc
Repository mothur_remove_lineage revision 947faa8b3205 owned by iuc
Repository mothur_shhh_flows revision af840f3c860e owned by iuc
Repository mothur_degap_seqs revision 6f08af23888a owned by iuc
Repository mothur_homova revision 8ebe74ce080b owned by iuc
Repository mothur_list_seqs revision dd84878a5f99 owned by iuc
Repository mothur_get_relabund revision 1593a3542944 owned by iuc
Repository mothur_sffinfo revision 51d7c2486a68 owned by iuc
Repository mothur_get_label revision 7f479eedd900 owned by iuc
Repository mothur_chimera_ccode revision 4e3288a885b1 owned by iuc
Repository mothur_corr_axes revision b030bd08117b owned by iuc
Repository mothur_pre_cluster revision 6532c3424bfe owned by iuc
Repository mothur_amova revision 8642712a607c owned by iuc
Repository mothur_otu_hierarchy revision 2e82b56377d8 owned by iuc
Repository mothur_sub_sample revision 67cb43432196 owned by iuc
Repository mothur_make_contigs revision 7238968f58f7 owned by iuc
Repository mothur_parse_list revision b52a0ca5e21c owned by iuc
Repository mothur_get_lineage revision 6fbd83d3a29f owned by iuc
Repository mothur_unifrac_weighted revision 88c441e56578 owned by iuc
Repository mothur_sens_spec revision 03dd3c928d65 owned by iuc
Repository mothur_chimera_slayer revision 0cc35c0a3d05 owned by iuc
Repository mothur_align_seqs revision abf7c15ecfef owned by iuc
Repository mothur_get_seqs revision c8b640a7aea1 owned by iuc
Repository mothur_parsimony revision fbb78e1bc3a3 owned by iuc
Repository mothur_heatmap_bin revision 35a719cd08da owned by iuc
Repository mothur_get_otus revision 3f68e8e700c9 owned by iuc
Repository mothur_cluster_classic revision 6e6b8dd3b770 owned by iuc
Repository mothur_metastats revision feb408da0143 owned by iuc
Repository mothur_normalize_shared revision 5e94c135ef00 owned by iuc
Repository mothur_make_group revision 37af7f0540e5 owned by iuc
Repository mothur_count_seqs revision ffee46220ddd owned by iuc
Repository mothur_classify_otu revision ff1bc0299372 owned by iuc
Repository mothur_get_groups revision 03af14e245fb owned by iuc
Repository mothur_biom_info revision 458d9a13d2f5 owned by iuc
Repository mothur_cluster_fragments revision 7b96c990a457 owned by iuc
Repository mothur_chimera_vsearch revision bdb4a58a2025 owned by iuc
Repository mothur_deunique_seqs revision 3767f899f13c owned by iuc
Repository mothur_remove_rare revision 189db1a23e9a owned by iuc
Repository mothur_merge_taxsummary revision 733bfc5872b1 owned by iuc
Repository mothur_nmds revision 35a66c1fae5e owned by iuc
Repository mothur_shhh_seqs revision 60d8636adf3e owned by iuc
Repository mothur_cooccurrence revision 353091f7b470 owned by iuc
Repository mothur_merge_files revision bc20680d28d5 owned by iuc
Repository mothur_reverse_seqs revision 7378ce8fb5c1 owned by iuc
Repository mothur_phylo_diversity revision 5a9bf07c250c owned by iuc
Repository mothur_chimera_perseus revision 54bc4863eb3d owned by iuc
Repository mothur_fastq_info revision 22da6f6c5be8 owned by iuc
Repository mothur_libshuff revision 1e4687170395 owned by iuc
Repository mothur_get_communitytype revision 10c5aa12a1d5 owned by iuc
Repository mothur_screen_seqs revision 63b74bfc8052 owned by iuc
Repository mothur_unique_seqs revision a033f325ad8d owned by iuc
Repository mothur_make_shared revision d0967ae326be owned by iuc
Repository mothur_trim_seqs revision bf67e22a405f owned by iuc
Repository mothur_rarefaction_single revision 47264675a4ea owned by iuc
Repository mothur_summary_single revision 2344ed181ae6 owned by iuc
Repository mothur_make_design revision 7a6b209a7bd7 owned by iuc
Repository mothur_make_biom revision 0b5397a74165 owned by iuc
Repository mothur_collect_shared revision 21a043c3ae00 owned by iuc
Repository mothur_pcoa revision 40b0d8eb3725 owned by iuc
Repository mothur_chimera_bellerophon revision 14a7c1eca23d owned by iuc
Repository mothur_classify_seqs revision 09bf9e496c64 owned by iuc
Repository mothur_anosim revision 3218d342b0de owned by iuc
Repository mothur_rename_seqs revision 02a42e3fa758 owned by iuc
Repository mothur_make_sra revision 88fa82b36a72 owned by iuc
Repository mothur_remove_otus revision 2a833eb1005c owned by iuc
Repository mothur_get_dists revision 10005fd5ad53 owned by iuc
Repository mothur_get_group revision d26de4fffac5 owned by iuc
Repository mothur_merge_count revision 6e3d1e4c9786 owned by iuc
Repository mothur_chimera_pintail revision 5f66e6f7f6c0 owned by iuc
Repository mothur_mimarks_attributes revision 1dbd31c7a031 owned by iuc
Repository mothur_clearcut revision ad924a6328cc owned by iuc
Repository mothur_cluster revision 6366f4483b35 owned by iuc
Repository mothur_bin_seqs revision 65000a433c3b owned by iuc
Repository mothur_tree_shared revision 8bca555fbcaf owned by iuc
Repository mothur_pairwise_seqs revision 8f31cb68e5bf owned by iuc
Repository mothur_get_mimarkspackage revision 2d19319f528a owned by iuc
Repository mothur_mantel revision d1a9a6260101 owned by iuc
Repository mothur_primer_design revision e8d5596c1d98 owned by iuc
Repository mothur_make_lefse revision 470c067fc0a0 owned by iuc
Repository mothur_seq_error revision 5a7674ac2c59 owned by iuc
Repository mothur_rarefaction_shared revision 64c70653e86d owned by iuc
Repository mothur_chimera_check revision 74dfe7be1563 owned by iuc
Repository mothur_split_groups revision ccdcfd746250 owned by iuc
Repository mothur_get_sharedseqs revision ea2e9c5e62b9 owned by iuc
Repository mothur_remove_groups revision 498dc0671d9e owned by iuc

Categories
Metagenomics - Tools enabling the study of metagenomes