Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository infernal
Name: infernal
Owner: bgruening
Synopsis: Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities.
Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence 
similarities. It is an implementation of a special case of profile stochastic context-free grammars called 
covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and 
RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve 
their secondary structure more than their primary sequence. http://infernal.janelia.org/
Content homepage: http://infernal.janelia.org/
Type: unrestricted
Revision: 9:1d74ed49cf41
This revision can be installed: True
Times cloned / installed: 5025
Dependencies of this repository

Repository msa_datatypes revision 70227007b991 owned by iuc

Contents of this repository

Name Description Version Minimum Galaxy Version
Align sequences to a covariance model against a sequence database 1.1.5+galaxy0 16.01
Build covariance models from sequence alignments 1.1.5+galaxy0 16.01
Prepare a covariance model database for cmscan 1.1.5+galaxy0 23.0
Search sequences against collections of covariance models 1.1.5+galaxy0 16.01
Search covariance model(s) against a sequence database 1.1.5+galaxy0 16.01
Summary statistics for covariance model 1.1.5+galaxy0 16.01

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis