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Repository transtermhp
Name: transtermhp
Owner: iuc
Synopsis: Finds rho-independent transcription terminators in bacterial genomes
TransTermHP finds rho-independent transcription terminators in bacterial
genomes. Each terminator found by the program is assigned a confidence value
that estimates its probability of being a true terminator.

http://transterm.cbcb.umd.edu/
Content homepage: https://transterm.cbcb.umd.edu
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/transtermhp/1d8ad7599f02
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/transtermhp
Type: unrestricted
Revision: 2:1d8ad7599f02
This revision can be installed: True
Times cloned / installed: 409
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_numpy_1_9 revision 83d12e13dbbd owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_transtermhp_2_09 revision 0a21f73e2f15 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bcbiogff 0.6.2 package
biopython 1.65 package
transtermhp 2.09 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
finds rho-independent transcription terminators in bacterial genomes 2.09.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis