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Repository stringtie

Name: stringtie

Owner: iuc

Synopsis: StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

Detailed description:

StringTie is a fast and highly efficient assembler of RNA-Seq alignments
into potential transcripts. It is primarily a genome-guided transcriptome assembler,
although it can borrow algorithmic techniques from de novo genome assembly to help
with transcript assembly. Its input can include not only the spliced read alignments
used by reference-based assemblers, but also longer contigs that were assembled
de novo from unambiguous, non-branching parts of a transcript.

Content homepage: http://ccb.jhu.edu/software/stringtie/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/stringtie/1ebd14235b92

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stringtie

Type: unrestricted

Revision: 17:1ebd14235b92

This revision can be installed: True

Times cloned / installed: 4000

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
StringTie View tool metadata	transcript assembly and quantification	2.1.1	16.01
StringTie merge View tool metadata	transcripts	2.1.1	16.01