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Repository gred_rnaseq
Name: gred_rnaseq
Owner: romaingred
Synopsis: align fastq and generate gene counts
Link to this repository: https://toolshed.g2.bx.psu.edu/view/romaingred/gred_rnaseq/1ed3f15421c9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/romaingred/gred_rnaseq
Type: unrestricted
Revision: 15:1ed3f15421c9
This revision can be installed: True
Times cloned / installed: 164
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_bowtie_2_2_6 revision 0d9cd7487cc9 owned by iuc
Repository package_tophat_2_1_0 revision ed92d4c8e7f6 owned by iuc
Repository package_bedtools_2_24 revision 3416a1d4a582 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bedtools 2.24 package
bowtie2 2.2.6 package
samtools 1.2 package
tophat 2.1.0 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Align directionnal RNAseq to obtain bedgraphs and raw count file 0.0.1 16.01