| StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It is primarily a genome-guided transcriptome assembler, although it can borrow algorithmic techniques from de novo genome assembly to help with transcript assembly. Its input can include not only the spliced read alignments used by reference-based assemblers, but also longer contigs that were assembled de novo from unambiguous, non-branching parts of a transcript. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stringtie
| Repository package_stringtie_1_2_3 revision ee804c6f3b97 owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| stringtie | 1.2.3 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| transcript assembly and quantification | 1.2.3 | any | |
| merge transcripts | 0.1.0 | any | |