Repository vcfgandalftools
Name: vcfgandalftools
Owner: urgi-team
Synopsis: VCF Gandalf tools
Tools developped for the Gandalf project. 
VCFFiltering filters VCF
VCFStorage and VCFCarto export for map conversion
Link to this repository: https://toolshed.g2.bx.psu.edu/view/urgi-team/vcfgandalftools/1fd1f727c330
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/urgi-team/vcfgandalftools
Type: unrestricted
Revision: 3:1fd1f727c330
This revision can be installed: True
Times cloned / installed: 404
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
VCF_Gandalf_Tools 1.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
VCFcarto can convert a tabulated marker file into a file with only the markers from 2 parents 0.01 any
Filters SNP on a VCF depending on depth, allele number and allele frequency 0.01 any
stores info from variant calling into a table. It will create a tabulate filed with SNP infos 0.01 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA