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Repository venn_list
Name: venn_list
Owner: peterjc
Synopsis: Draw Venn Diagram (PDF) from lists, FASTA files, etc
Draw Venn Diagrams for 1, 2 or 3 sets of identifiers as a PDF file.

Can parse FASTA, FASTQ, SFF or tabular files (taking column one) for identifiers.
This can be combined with the extensive tabular file filtering and manipulation
tools within Galaxy to prepare the input data.

Uses the R/Bioconductor package limma to draw the PDF file, called from Python with
rpy.

Uses Biopython to parse SFF files.
Content homepage: https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/peterjc/venn_list/20d347feb882
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/venn_list
Type: unrestricted
Revision: 10:20d347feb882
This revision can be installed: True
Times cloned / installed: 2517
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_r_2_11_0 revision 5824d2b3bc8b owned by devteam (prior install required)
Repository package_r_2_11_0 revision 5824d2b3bc8b owned by devteam (prior install required)
Repository package_numpy_1_9 revision 83d12e13dbbd owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_galaxy_sequence_utils_1_0_1 revision c1ab450748ba owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
biopython 1.67 package
galaxy_sequence_utils 1.0.1 package
limma 3.25.3 package
rpy 1.0.3 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
from lists 0.0.11 any

Categories
Graphics - Tools producing images
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data