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Repository rpthermo
Name: rpthermo
Owner: tduigou
Synopsis: Calculate the formation energy of chemical species and the Gibbs free energy of their reactions and pathways in an SBML
Calculate the formation energy of chemical species either using an internal database or estimate it by decomposing them using the component contribution (https://gitlab.com/elad.noor/component-contribution) method. Thereafter this tool predicts the Gibbs free energy of reactions and of the whole heterologous pathway by combining the formation energy of each individual compound. Source code may be found at the following location: https://github.com/brsynth/rptools/tree/master/rptools/rpthermo
Development repository: https://github.com/brsynth/synbiocad-galaxy-wrappers/tree/master/rpThermo
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/tduigou/rpthermo/21a900eee812
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/tduigou/rpthermo
Type: unrestricted
Revision: 1:21a900eee812
This revision can be installed: True
Times cloned / installed: 101

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Name Description Version Minimum Galaxy Version
Calculate the formation energy of chemical species and the Gibbs free energy of their reactions and pathways in an SBML 5.12.1 19.09

Categories
Synthetic Biology - Tools for synthetic biology