Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository cat_add_names
Name: cat_add_names
Owner: iuc
Synopsis: CAT add_names from the CAT package
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs.
A CAT reference dataset requires about 250 GB of disk space.
Content homepage: https://github.com/dutilh/CAT
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/cat_add_names/21bf2f07f3f3
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cat_add_names
Type: unrestricted
Revision: 3:21bf2f07f3f3
This revision can be installed: True
Times cloned / installed: 415

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
annotate with taxonomic names 5.2.3+galaxy0 16.01

Categories
Metagenomics - Tools enabling the study of metagenomes