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Repository qupath_roi_splitter
Name: qupath_roi_splitter
Owner: galaxyp
Synopsis: QuPath ROI Splitter
This Galaxy tool extracts ROI coordinates of QuPath TMA annotation by cell type.
It takes a collection containing GeoJSON files with QuPath annotation data as input and generates
a list of text files containing the ROI coordinates for each cell type.
Content homepage: https://github.com/npinter/ROIsplitter
Development repository: hhttps://github.com/npinter/ROIsplitter
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/galaxyp/qupath_roi_splitter/24ccdcfbabac
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/qupath_roi_splitter
Type: unrestricted
Revision: 3:24ccdcfbabac
This revision can be installed: True
Times cloned / installed: 266

Contents of this repository

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Name Description Version Minimum Galaxy Version
Split ROI coordinates of QuPath TMA annotation by cell type (classification) 0.2.1+galaxy0 16.01

Categories
Imaging - Utilities to support imaging