Repository fastq_seq_count
Name: fastq_seq_count
Owner: jjohnson
Synopsis: Count the occurence of query sequences in fastq reads
This tool searches fastq reads for given nucleic acid query sequences.
A typical use would be to compare the relative occurrence of two query sequences.
NOTE: This only reports query sequences that are completely contained in a fastq read;
queries that may partially match at the ends of a read will not be counted.
Development repository: https://github.com/jj-umn/galaxytools/tree/master/fastq_seq_count
Link to this repository: https://toolshed.g2.bx.psu.edu/view/jjohnson/fastq_seq_count/27c39155d53b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/fastq_seq_count
Type: unrestricted
Revision: 0:27c39155d53b
This revision can be installed: True
Times cloned / installed: 117

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
0.1.1 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis