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Repository nonpareil

Name: nonpareil

Owner: iuc

Synopsis: Estimate average coverage in metagenomic datasets

Detailed description:

Nonpareil uses the redundancy of the reads in metagenomic datasets to estimate the average
coverage and predict the amount of sequences that will be required to achieve "nearly complete coverage".

Content homepage: http://nonpareil.readthedocs.io

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/nonpareil

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/nonpareil/280386b252a5

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/nonpareil

Type: unrestricted

Revision: 0:280386b252a5

This revision can be installed: True

Times cloned / installed: 540

Repository README files - may contain important installation or license information

Readme files

Nonpareil memory usage ======================= By default, this tool is configured to limit the memory consumption to 1024 Mib. Ideally this value should be larger than the sequences to analyze (discarding non-sequence elements like headers or quality). This is particularly important when running in multiple cores. This value is approximated. Maximum value in this version: 4194303. You can set the NONPAREIL_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file: ``` 1024 ```

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Nonpareil View tool metadata	to estimate average coverage and generate Nonpareil curves	3.1.1.0	16.01