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Repository cdhit
Name: cdhit
Owner: jjohnson
Synopsis: cd-hit - reduce a collection of sequences to a representative sample
Cluster a set of sequences to generate a set of representative sequences.  http://weizhong-lab.ucsd.edu/cd-hit/wiki/doku.php?id=cd-hit_user_guide
Link to this repository: https://toolshed.g2.bx.psu.edu/view/jjohnson/cdhit/28b7a43907f0
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/cdhit
Type: unrestricted
Revision: 5:28b7a43907f0
This revision can be installed: True
Times cloned / installed: 5882
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
cd-hit 4.6.1 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Cluster a protein dataset into representative sequences 1.2 any
Cluster a nucleotide dataset into representative sequences 1.2 any

Categories
Fasta Manipulation - Tools for manipulating fasta data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis