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Repository episcanpy_preprocess
Name: episcanpy_preprocess
Owner: iuc
Synopsis: Wrapper for the Episcanpy tool suite: scATAC-seq Preprocessing
EpiScanpy is a toolkit to analyse single-cell open chromatin (scATAC-seq) data. EpiScanpy is the epigenomic extension of the very popular scRNA-seq analysis tool Scanpy. It includes preprocessing, visualization, clustering, differential expression testing.
Content homepage: https://github.com/colomemaria/epiScanpy
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/episcanpy/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/episcanpy_preprocess/29f5f25b9935
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess
Type: unrestricted
Revision: 1:29f5f25b9935
This revision can be installed: True
Times cloned / installed: 79

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
with EpiScanpy 0.3.2+galaxy1 21.01

Categories
Epigenetics - Tools for analyzing Epigenetic/Epigenomic datasets