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Repository raceid_inspectclusters
Name: raceid_inspectclusters
Owner: iuc
Synopsis: Wrapper for the RaceID pipeline tool: Cluster Inspection using RaceID
RaceID is a method for cell type identification from single-cell RNA-seq data by unsupervised learning. An initial clustering is followed by an outlier identification based on a background model of combined technical and biological variability in single-cell RNA-seq data obtained by quantification with unique molecular identifiers. StemID permits subsequent inference of a lineage tree based on clusters, i.e. cell types, identified by RaceID.
Content homepage: https://github.com/dgrun/RaceID3_StemID2_package/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/raceid_inspectclusters/2b0d3e2f402a
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters
Type: unrestricted
Revision: 8:2b0d3e2f402a
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Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
examines gene expression within clusters 0.2.3+galaxy2 21.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.