| Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. http://catchenlab.life.illinois.edu/stacks/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap