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Repository jasminesv
Name: jasminesv
Owner: iuc
Synopsis: Merge structural variants across samples
Jointly Accurate Sv Merging with Intersample Network Edges is a tool used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information (chromosome, start, end, length), type and strand information, and a number of other values. Jasmine represents the set of all SVs across samples as a network, and uses a modified minimum spanning forest algorithm to determine the best way of merging the variants such that each merged variants represents a set of analogous variants occurring in different samples.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/jasminesv
Type: unrestricted
Revision: 1:2b62154e39c8
This revision can be installed: True
Times cloned / installed: 186

Contents of this repository

Name Description Version Minimum Galaxy Version
Merge structural variants across samples 1.0.11+galaxy1 20.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA