Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository jbrowse
Name: jbrowse
Owner: iuc
Synopsis: JBrowse Genome Browser integrated as a Galaxy Tool
JBrowse is a fast, extensible JS+HTML5 genome browser.

This repository contains a couple of tools aimed at building up a complete
JBrowse Genome Browser deployment from raw data files such as gff3, bed, bam,
vcf, blastxml, and more...

The tools produce a ready-to-deploy HTML file and associated processed
datasets, allowing visualization of the genome either from within Galaxy, or
outside of Galaxy.

The tool must be whitelisted for HTML content. If BAM files are displayed, it
must be served from an apache or nginx server implementing sendfile.

https://jbrowse.org
Content homepage: https://jbrowse.org
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/2bb2e07a7a21
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/jbrowse
Type: unrestricted
Revision: 31:2bb2e07a7a21
This revision can be installed: True
Times cloned / installed: 5152

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
upgrades the bare data directory to a full JBrowse instance 1.16.4+galaxy3 16.01
genome browser 1.16.4+galaxy3 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data