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Repository control_freec
Name: control_freec
Owner: iuc
Synopsis: Wrapper for Control-FREEC
Control-FREEC is a tool for detection of copy-number changes and allelic imbalances (including LOH) using deep-sequencing data originally developed by the Bioinformatics Laboratory of Institut Curie (Paris). It automatically computes, normalizes, segments copy number and beta allele frequency (BAF) profiles, then calls copy number alterations and LOH.
Content homepage: http://boevalab.inf.ethz.ch/FREEC/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/freec
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/control_freec/2c6349fb175c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/control_freec
Type: unrestricted
Revision: 1:2c6349fb175c
This revision can be installed: True
Times cloned / installed: 336

Contents of this repository

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Name Description Version Minimum Galaxy Version
detects copy-number changes and allelic imbalances 11.6+galaxy1 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA