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Repository spades_coronaspades
Name: spades_coronaspades
Owner: iuc
Synopsis: SARS-CoV-2 de novo genome assembler.
Due to an increased interest in coronavirus research, a coronavirus assembly mode for SPAdes assembler has been developed (a.k.a coronaSPAdes).
It enables assembly of full-length coronaviridae genomes from the transcriptomic and metatranscriptomic data.
Content homepage: https://github.com/ablab/spades
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/spades_coronaspades/2cf8a2028ddc
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/spades_coronaspades
Type: unrestricted
Revision: 13:2cf8a2028ddc
This revision can be installed: True
Times cloned / installed: 534

Contents of this repository

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Name Description Version Minimum Galaxy Version
SARS-CoV-2 de novo genome assembler 4.2.0+galaxy0 20.01

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Metagenomics - Tools enabling the study of metagenomes