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Repository seurat_run_tsne
Name: seurat_run_tsne
Owner: ebi-gxa
Synopsis: Wrapper for the seurat tool suite: Seurat RunTSNE
Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data. Seurat aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data.
Content homepage: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_run_tsne/2d294978b152
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne
Type: unrestricted
Revision: 4:2d294978b152
This revision can be installed: True
Times cloned / installed: 610

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
run t-SNE dimensionality reduction 3.1.2+galaxy0 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis