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Repository schicexplorer_schicclusterminhash

Name: schicexplorer_schicclusterminhash

Owner: iuc

Synopsis: Wrapper for scHiCExplorer: scHicClusterMinHash

Detailed description:

Sequencing techniques that probe the 3D organization of the genome generate large amounts of
data whose processing, analysis and visualization is challenging. Here, we present scHiCExplorer,
a set of tools for the analysis and visualization of single-cell chromosome conformation data. scHiCExplorer
facilitates the creation of contact matrices, correction of contacts, merging,
reordering or chromosomes, dimension reduction and clustering of cells.
Repository-Maintainer: Joachim Wolff
https://github.com/joachimwolff/schicexplorer

Content homepage: https://github.com/joachimwolff/schicexplorer

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicclusterminhash/3048283ee054

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicclusterminhash

Type: unrestricted

Revision: 2:3048283ee054

This revision can be installed: True

Times cloned / installed: 166

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
scHicClusterMinHash View tool metadata	clusters single-cell Hi-C interaction matrices with MinHash dimension reduction	4.1	22.05