This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository freebayes_wrapper
Name: freebayes_wrapper
Owner: devteam
Synopsis: Call SNPS with Freebayes
This tool uses Freebayes to call SNPS given a reference sequence and a BAM alignment file.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/freebayes_wrapper/33a0e6aca936
Type: unrestricted
Revision: 0:33a0e6aca936
This revision can be installed: True
Times cloned / installed: 511
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_freebayes_0_9_6_9608597d revision 7615ee9e216d owned by devteam
Repository package_samtools_0_1_16 revision 3cc494fb5a14 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
freebayes 0.9.6_9608597d12e127c847ae03aa03440ab63992fedf package
samtools 0.1.16 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Bayesian genetic variant detector 0.5.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA