Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository graphprot_predict_profile
Name: graphprot_predict_profile
Owner: rnateam
Synopsis: GraphProt from GraphProt framework
GraphProt is a computational framework for learning sequence- and structure-binding preferences of 
RNA-binding proteins (RBPs) from high-throughput experimental data such as CLIP-seq data.
After model training, the learned sequence or structure models can be applied to predict RBP binding 
profiles on FASTA sequences.
Content homepage: https://github.com/dmaticzka/GraphProt
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot
Link to this repository: https://toolshed.g2.bx.psu.edu/view/rnateam/graphprot_predict_profile/33b590aa07c1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/graphprot_predict_profile
Type: unrestricted
Revision: 6:33b590aa07c1
This revision can be installed: True
Times cloned / installed: 387

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- Train models and predict RBP binding profiles 1.1.7+galaxy2 23.1

Categories
CLIP-seq - Tools for CLIP-seq
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis